Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916254.1_cds_XP_016465954.1_58860
CDS Infomation

[gene=LOC107788760] [db_xref=GeneID:107788760] [protein=pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like] [protein_id=XP_016465954.1] [location=join(25676..25681,25848..25983,27404..27628,29672..29742,30885..31131,31447..31623,31708..31847,32028..32125,32268..32376,33455..33632,33733..33962,34063..34239,34572..34643,34763..34939,35104..35165,35279..35431,35528..36800)] [gbkey=CDS]
Sequence

ATGCAGCAAGGAGATGTTGGACCAATTGATTTGGATAAGACAACAACGACATTGGAACCT
GATAAGACGAGTGGTGGGGGTCTTTTCGTTCCTGGAAAGGATAGAGTAGTTTTCAAACCT
TCAGAGCGGAAATCTCTTCTAGGGCTTGATGCCTTGGCGATTGCTAAAAAGGGAGGGGCT
ACCGTGGAGAGTGGATTTAAAGTTCCAAGGGAGAAACTTGCTTCAGTTGTGTCATCTTTA
GATGAGGACGAGGAGGCATCTGCTGCCTCTGGAGTTGATGAGTTGGGAATTAGTGCATCT
AATGTTTCACGGAATAATGTACAGAGGAGGTATCGTGAATCCTGTGCTAGTGAGGCATAT
GTTTCAGGTAGTACAGTAACCGATGAACGGGAAGATCCCGAGACAGTCCCGAGGCCTCAC
TTGAATGAGAACACAGAGGTTCCAGCTGCATCTTCTGGGAGTTCACGCTCTAGGAATACT
ACTAGGCGTGAGTCAGTTGACCGTGAAAGGGATAGAAGTAAATACAGGGATAATTACAGA
AGTGAAAGCAGGGAAGGGAGAAGGGGAGAGAGAACTAGCAGGGAAGAGCACCGTTACAGG
GATTCAGCACATGGTTATGAAAGAGAATATGATGGGGATGGCGGAAGAAAAAGAAGTAGA
TATGAAGGCTCTAGGAGGACACCTGGAAGATCTGAATGGGATGATGGTAGATGGGAGTGG
CAAGATACCCCTCGTCGTGATAGTCGTTCCAATAGTAGCAGCAGACGTCATGAGCCTTCA
CCATCCCCAATGTTTCTTGGTGCTTCCCCTGATGCTCGGCTTGTTTCTCCATGGCTGGGG
GATCGTACTCCTCATTCTGCTGAGGCTGCTTCCCCGTGGGACAGTGTGGCTCCTTCTCCA
ACTCCAATAAGGGCATCTGGGTCATCAGTAAGATCTTCAAGTTCTAGATATGGTGGAAAA
TCCAATTTGATTACGTCTTCTACAAAAAGCTTTCTGTCCGAGGATGGAGTAGATGACACA
AATGGTGCCTCTGAAGTTCAAAATCAAGAGATTACTGAAAGTATGCGTCTAGAGATGGAG
TATAATTCTGATCGTGCCTGGTATGACCGAGAAGAAGGTAGTACAGTGTTTGAGGGGGAT
GGTTCATCAGTATTCCTTGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTAGCC
AAAAAACTGGTTCGTAGAGATGGGAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCA
CAGCTCACTGCAGACAGTGCTCAATGGGAAGATCGTCAGCTTTTGAGATCTGGAGCTGTT
AAAGGTACCGAGTTGCAGACGGAGTTTGATGATGAGGAGGAACGGAAAGTTATTCTTCTT
GTTCATGATACAAAGCCCCCCTTTTTGGATGGGAGAATTGTTTTCACCAAGCAAGCTGAG
CCGATAATGCCAATAAAGGACCCAACATCAGATATGGCCATAATTTCACGCAAAGGGTCA
GCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCATAAGTCTCGTCAAAGATTCTGG
GAGCTTGCTGGCTCAAAACTCGGAGATATCCTTGGTGTGGAGAAGAGTGCAGAGCAGGTT
GATGCAGATACTGCTGTAGTGGGTGAGGATGGTGAGGTTGATTTTAAGGGAGAAGCTAGA
TTCTCACAGCACTTAAAGACAGGGGAAGCTGTTAGTGATTTTGCAAAATCAAAAACACTT
TCACAGCAAAGGCAATATCTGCCCATCTTCTCTGTGCGAGATGATTTACTGCAGGTGGTT
CGCGAAAACCAGATAGTGGTTGTTGTTGGAGAAACTGGTTCTGGAAAGACAACGCAGCTA
ACCCAGTACCTGTATGAAGATGGCTATACAATTAGTGGGATCGTTGGATGCACCCAACCC
AGGCGTGTGGCAGCCATGAGTGTTGCAAAAAGAGTTAGTGAAGAAATGGAAACTGAGCTT
GGTGATAAAGTTGGATATGCTATTCGTTTTGAAGATGTCACTGGGCCAAGTACAGTTATC
AAGTACATGACTGATGGTGTGCTTCTAAGGGAAACACTCAAAGATCCCGATCTTGAAAAA
TATCGTGTAATTGTTATGGACGAAGCCCATGAGAGATCACTTAATACGGATGTCCTTTTT
GGCATTCTTAAGAAAGTTGTGGCTAGGCGACGTGATTTTAAGCTTATCGTCACTTCTGCC
ACTCTCAATGCCCAAAAATTCTCCAACTTCTTTGGGAGTGTACCGATATTTCACATACCT
GGAAGAACCTTTCCTGTTCAAAAACTGTATAGTAAAACCCCATGTGAAGACTATGTCGAA
GCTGCAGTTAAACAAGCCATGACCATCCATATTACTAGTGCACCAGGTGATATACTCATC
TTCATGACTGGTCAGGATGAGATTGAAGCTACCTGTTATGCACTTTCTGAGCGGATGGAA
CAGCTTACCTCGTCAACAAAGCAAGCAGTGCCCAAGCTGTTAATTCTTCCTATATACTCC
CAACTGCCTGCTGATTTGCAAGCAAAAATATTCCAGAAAGCTGAAGACGGGGCACGCAAA
TGCATTGTTGCTACTAATATTGCTGAAACATCCTTGACTGTTGATGGAATTTTCTACGTC
ATTGATACAGGCTATGGTAAAATGAAGGTGTACAATCCACGAATGGGTATGGATGCTCTG
CAAGTGTTTCCTGTTAGTCGAGCTGCCGCTGATCAGCGTGCTGGTCGAGCTGGTAGAACT
GGCCCAGGGACTTGTTACCGGCTTTACACTGAGAATGCATATGAGAATGAAATGCTTCCA
AGCCCCGTGCCAGAAATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCT
CTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATC
CTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAATAATGTTGGGGATTTAACG
GACCTTGGCTGGAAAATGGTGGAGTTCCCGTTGGACCCTCCCCTTGCCAAAATGCTCTTG
ATGGGAGAACAACTAGAATGCTTAAATGAGGTTCTGACAATTGTTTCTATGCTTTCAGTG
CCTTCAGTTTTCTTTAGACCCAAGGATAGGGCAGAGGAAAGTGATGCGGCTAGGGAAAAG
TTTTTTGTGCCTGAATCTGATCATCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCT
AATCAATATAGGGGGGACTGGTGTAACGACCACTTTTTACAGGTCAAAGGTCTGCGCAAG
GCTAGGGAAGTAAGATCCCAATTGCTGGACATCCTCAAGACACTTAAAATTCCACTCACC
TCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATTTGTTCTGCATACTTCCACAAT
GCAGCTAGACTGAAGGGAGTTGGGGAATATGTTAATTGCAGGAATGGGATGCCTTGTAAC
TTGCATCCCACTAGTGCTNAATGTAGAGAATGTCTAAGATATCAAGTGTAG

Peptide Sequence

PEP ID

XP_016465954.1
PEP Infomation

PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like [Nicotiana tabacum]
Sequence

MQQGDVGPIDLDKTTTTLEPDKTSGGGLFVPGKDRVVFKPSERKSLLGLDALAIAKKGGA
TVESGFKVPREKLASVVSSLDEDEEASAASGVDELGISASNVSRNNVQRRYRESCASEAY
VSGSTVTDEREDPETVPRPHLNENTEVPAASSGSSRSRNTTRRESVDRERDRSKYRDNYR
SESREGRRGERTSREEHRYRDSAHGYEREYDGDGGRKRSRYEGSRRTPGRSEWDDGRWEW
QDTPRRDSRSNSSSRRHEPSPSPMFLGASPDARLVSPWLGDRTPHSAEAASPWDSVAPSP
TPIRASGSSVRSSSSRYGGKSNLITSSTKSFLSEDGVDDTNGASEVQNQEITESMRLEME
YNSDRAWYDREEGSTVFEGDGSSVFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKRLS
QLTADSAQWEDRQLLRSGAVKGTELQTEFDDEEERKVILLVHDTKPPFLDGRIVFTKQAE
PIMPIKDPTSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQV
DADTAVVGEDGEVDFKGEARFSQHLKTGEAVSDFAKSKTLSQQRQYLPIFSVRDDLLQVV
RENQIVVVVGETGSGKTTQLTQYLYEDGYTISGIVGCTQPRRVAAMSVAKRVSEEMETEL
GDKVGYAIRFEDVTGPSTVIKYMTDGVLLRETLKDPDLEKYRVIVMDEAHERSLNTDVLF
GILKKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVQKLYSKTPCEDYVE
AAVKQAMTIHITSAPGDILIFMTGQDEIEATCYALSERMEQLTSSTKQAVPKLLILPIYS
QLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDAL
QVFPVSRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLPSPVPEIQRTNLGNVVLLLKS
LKIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTDLGWKMVEFPLDPPLAKMLL
MGEQLECLNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKA
NQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHN
AARLKGVGEYVNCRNGMPCNLHPTSAXCRECLRYQV

Transcript Sequence

Gene sequence data has not been registered.